smpgd2018 : Statistical Methods for Post Genomic Data
11-12 janv. 2018 Montpellier (France)
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Programme
Semaine
Jeu. 11
Ven. 12
Liste
Jeu. 11
Ven. 12
09:00
10:00
11:00
12:00
13:00
14:00
15:00
16:00
17:00
18:00
19:00
Discours de bienvenue
9:15 - 9:30 (15min)
Discours de bienvenue
Commité d'organisation
Keynote 1 : Lluis Quintana Murci
9:30 - 10:30 (1h)
Keynote 1 : Lluis Quintana Murci
›
Evolutionary genetic dissection of the genus Homo and its immune response
- lluis Quintana Murci, 1Unit of Human Evolutionary Genetics, Institut Pasteur, Paris, France; 2CNRS URA3012, Paris, France.
09:30-10:30 (1h)
Pause café
10:30 - 10:50 (20min)
Pause café
Modèles d'évolution et inférence Bayesienne
10:50 - 12:20 (1h30)
Modèles d'évolution et inférence Bayesienne
Pierre Pudlo
›
Combining relaxed clocks with gene transfers to date species trees
- Bastien Boussau, Laboratoire de Biométrie et Biologie Evolutive
10:50-11:20 (30min)
›
Improved estimators of the population recombination rata
- Andreas Futschik, Johannes Kepler Universität Linz
11:20-11:50 (30min)
›
Inferring the genomic variation in introgression rates
- Camille Roux, Université de Lille
11:50-12:20 (30min)
Déjeuner
12:20 - 13:50 (1h30)
Déjeuner
Contributed
13:50 - 14:50 (1h)
Contributed
Amphi
Pierre Pudlo
›
Estimation of Fst and tree inference under hierarchical population structure
- Tristan Mary-Huard, Institut national de la recherche agronomique [Paris-siège]
13:50-14:10 (20min)
›
Model choice using Approximate Bayesian Computation via random forests: analyzes based on model grouping to make inferences about the genetic history of Pygmy human populations
- Jean-Michel Marin, IMAG
14:10-14:30 (20min)
›
ABC random forests for Bayesian parameter inference
- Louis Raynal, Institut Montpelliérain Alexander Grothendieck
14:30-14:50 (20min)
Keynote 2 : Ruth Heller
14:50 - 15:50 (1h)
Keynote 2 : Ruth Heller
›
Estimation and testing following aggregated association tests
- Ruth Heller, Tel Aviv University
14:50-15:50 (1h)
Pause café
15:50 - 16:10 (20min)
Pause café
Contributed
16:10 - 17:30 (1h20)
Contributed
Amphi
›
Modeling Spatial Genomic Interactions with the Hawkes model
- Anna Bonnet, Laboratoire de Biométrie et Biologie Evolutive
16:10-16:30 (20min)
›
From kmers to genetic events: compacted De Bruijn graphs shed light on bacterial GWAS
- Magali Jaillard Dancette, bioMérieux, Laboratoire de Biométrie et Biologie Evolutive UMR5558
16:30-16:50 (20min)
›
Multiple kernel learning for integrative clustering in genomic precision medicine
- Alessandra Cabassi, MRC Biostatistics Unit, University of Cambridge
16:50-17:10 (20min)
›
Gene-specific identification of spatial associations between epigenomic marks
- Gabriele Schweikert, University of Edinburgh
17:10-17:30 (20min)
Session poster et cocktail
17:30 - 19:30 (2h)
Session poster et cocktail
Keynote 3 : Elizabeth Purdom
9:00 - 10:00 (1h)
Keynote 3 : Elizabeth Purdom
Amphi
›
Estimation of lineage trajectories from single cell mRNA data
- Elizabeth Purdom, UC Berkeley
09:00-10:00 (1h)
Single-cell
10:00 - 10:30 (30min)
Single-cell
›
Gene network inference using single-cell data: from mechanistic modelling to statistics
- Ulysse Herbach, Laboratoire de Biologie et Modélisation de la Cellule, Inria team DRACULA, Institut Camille Jordan
10:00-10:30 (30min)
Pause café
10:30 - 10:50 (20min)
Pause café
Single-Cell / Contributed
10:50 - 12:10 (1h20)
Single-Cell / Contributed
Amphi
›
Splicing analysis in single-cell RNA-seq
- Guido Sanguinetti, University of Edinburgh
10:50-11:20 (30min)
›
Information theoretic approaches to single cell gene regulatory network inference
- Thalia Chan, Imperial College
11:20-11:50 (30min)
›
Variational Inference for Probabilistic Poisson PCA
- Stéphane Robin, MIA-Paris
11:50-12:10 (20min)
Déjeuner
12:10 - 13:50 (1h40)
Déjeuner
Keynote 4 : Peter Mueller
13:50 - 14:50 (1h)
Keynote 4 : Peter Mueller
Amphi
›
The future of Bayesian clinical trial design
- Peter Mueller, UT Austin Dpt of Statistics and Data Sc
13:50-14:50 (1h)
Bayésien non-paramétrique et santé
14:50 - 15:50 (1h)
Bayésien non-paramétrique et santé
Alice Cleynen
›
A Bayesian Nonparametric Approach to Ecological Risk Assessment
- Julyan Arbel
14:50-15:20 (30min)
›
Modeling population structure under hierarchical Dirichlet processes
- Lloyd Elliott, Oxford University
15:20-15:50 (30min)
Pause café
15:50 - 16:10 (20min)
Pause café
Contributed
16:10 - 17:10 (1h)
Contributed
Amphi
Alice Cleynen
›
Computing competing risks based on family history in genetic disease with variable age at onset
- Alexandra Lefebvre, Laboratoire de Probabilité et Modèles Aléatoires
16:10-16:30 (20min)
›
Variable selection in multivariate linear models with high-dimensional covariance matrix estimation
- Marie Perrot-Dockès, UMR MIA-Paris
16:30-16:50 (20min)
›
Multiway high-dimensional lasso-penalized analysis with imputation of missing data applied to postgenomic data in an Ebola vaccine trial
- Hadrien Lorenzo
16:50-17:10 (20min)
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